For a quick to the point intro https://help.ubuntu.com/community/UsingTheTerminal
One thing you wont be able to escape once you start working on Linux is MakeFiles, here is a very nice link explaining all that you need to know about Make files.
http://mrbook.org/tutorials/make/
in case you need more
http://www.opussoftware.com/tutorial/TutMakefile.htm
The next thing for a bit advanced users, well you would definitely feel the need to mould your machine according to your taste. Scripting my friend is the answer. Its a really powerful tool, once you get the feel of it you won't be able to let go of it. Here is a link to an excellent tutorial on scripting. It has one little bug, just replace !/bin/sh with !/bin/bash and you are all set to go :) Enjoy :D
http://www.freeos.com/guides/lsst/index.html
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